Supported Data Formats
We always encourage users to load unprocessed data (directly from the instrument) so that PEAKS can access the complete, unprocessed experimental data including the mass spectrometry survey scan and retention time information.
Supported Data Formats for PEAKS Studio / PEAKS Online
| Vendor | Data Type | Data Acquisition Type |
|---|---|---|
| Thermo | .raw | DDA / DIA / PRM / hybrid-DIA |
| SCIEX | .wiff / .wiff2 | DIA / SWATH DIA / ZT Scan DIA |
| Bruker | .d / .tdf / .tsf / .baf / .yep/ .fid | DDA / DIA |
| Waters | .raw | HDDA / DIA / MSe |
| Shimadzu | .lcd | DDA / DIA |
| Agilent | .d | DDA / DIA |
Additional Supported Standard Data Formats
- .DAT (AB converter)
- .DTA (Sequest)
- .MGF (Mascot)
- .mzData (HUPO format)
- .mzML (including mzIdentML)
- .mzXML
- .PepXML
- .PKL (MassLynx)
- .XML (mzData schema)
- .XML (mzXML schema)